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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027184838.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 202aa MW: 23580.2 Da PI: 10.0233 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.5 | 5e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtfskRr+g+lKKA+ELSvLCdaeva+i+fs++gkl+e+ss XP_027184838.1 9 KRIENSTSRQVTFSKRRKGLLKKAFELSVLCDAEVALIVFSPSGKLFEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 67.6 | 4.3e-23 | 81 | 171 | 10 | 100 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ++++ ++e+a L+k+ie L++++R++lG++L+s s+ eL+q+e+qLeksl+ iRs+K l++e i++l++ k l+++n +Lr+k+ee XP_027184838.1 81 QMDDSQHFEEEVAILRKKIELLEETKRKFLGDGLDSSSIDELEQIEHQLEKSLRIIRSRKILLFCERINQLKEEGKILRKKNAELREKYEE 171 5567899*********************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence |
MVRGKTQIKR IENSTSRQVT FSKRRKGLLK KAFELSVLCD AEVALIVFSP SGKLFEFSSS 60 SATSTTERYR KCIKNLRPSK QMDDSQHFEE EVAILRKKIE LLEETKRKFL GDGLDSSSID 120 ELEQIEHQLE KSLRIIRSRK ILLFCERINQ LKEEGKILRK KNAELREKYE ERQLELSIGQ 180 QFSSLEQVKE VETQLFIGLP NR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 1e-64 | MIKC_MADS family protein |