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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027184834.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 212aa MW: 24666.3 Da PI: 9.8243 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.1 | 1.3e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien rqvtfskRr g+lKKA+ELSvLCdaeva+iifs++gklye+ss XP_027184834.1 9 KRIENAASRQVTFSKRRRGLLKKAFELSVLCDAEVALIIFSPSGKLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 72 | 1.8e-24 | 82 | 171 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + +++++ ++e+a L+k++e L++++R+llG++L++ s+ eLqq+e qLe+sl+ iRs+K+ l+ eqi++l++ ek l++en +Lr+k+ XP_027184834.1 82 MALQHSQNFEEEVAILRKKLEILEETKRKLLGDGLDTSSFDELQQIEGQLERSLNIIRSRKSLLFWEQIDHLKEEEKILRKENAELREKI 171 566899**********************************************************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence |
MVRGKTQIKR IENAASRQVT FSKRRRGLLK KAFELSVLCD AEVALIIFSP SGKLYEFSSS 60 SATSTIERYQ KNIRNLCPSE KMALQHSQNF EEEVAILRKK LEILEETKRK LLGDGLDTSS 120 FDELQQIEGQ LERSLNIIRS RKSLLFWEQI DHLKEEEKIL RKENAELREK INLQYDQQRL 180 GPSISRQPLS LRQVKEIETR LFIGLPESSN YP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 6e-69 | MIKC_MADS family protein |