PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027184638.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

AP2

Protein Properties

Length: 432aa MW: 46938.4 Da PI: 8.7794

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027184638.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.1	3.9e-17	91	150	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g XP_027184638.1 91 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 150 57*****************766644468557***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MASSSSRPPP GKVETGGCSS SGGGGGGGET SEAVAAAATG AVMVGPIPGG GGAGDELAMY 60 RGLKKAKKER GCTAKERISK MPPCTAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN 120 KKGKQVYLGA YDDEEAAARA YDLAALKYWG PGTLINFPVT DYTRDLEEMQ NFSREDYLAS 180 LRRKSSGFSR GVSKYRPLSS RWDPQFGAAD DATAENEYIG GFCIDRKFDL TTYIKWWGTN 240 KPRQVDPHAK SSEETSYRPG EDMSSELKSV ELTAKPTEPY EMPRLGVPQE GKHRKGAVSA 300 MSILSQSAAF KSLQEKGLKK KAIDENDENE DKNVINKKDY GKGVEKCSHD GGNERVGAGL 360 GMTGGLPVPR NVYPLTPLLT APLVTNYNSI DSLNDPVLWT SLVSVLPVGS SRTSEVAKNE 420 SSSEYNLFQQ EG

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MASSSSRPPP GKVETGGCSS SGGGGGGGET SEAVAAAATG AVMVGPIPGG GGAGDELAMY  60
RGLKKAKKER GCTAKERISK MPPCTAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN  120
KKGKQVYLGA YDDEEAAARA YDLAALKYWG PGTLINFPVT DYTRDLEEMQ NFSREDYLAS  180
LRRKSSGFSR GVSKYRPLSS RWDPQFGAAD DATAENEYIG GFCIDRKFDL TTYIKWWGTN  240
KPRQVDPHAK SSEETSYRPG EDMSSELKSV ELTAKPTEPY EMPRLGVPQE GKHRKGAVSA  300
MSILSQSAAF KSLQEKGLKK KAIDENDENE DKNVINKKDY GKGVEKCSHD GGNERVGAGL  360
GMTGGLPVPR NVYPLTPLLT APLVTNYNSI DSLNDPVLWT SLVSVLPVGS SRTSEVAKNE  420
SSSEYNLFQQ EG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41710.1	1e-138	AP2 family protein