PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027183830.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

AP2

Protein Properties

Length: 491aa MW: 53620.6 Da PI: 9.3331

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027183830.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.8	4.7e-17	91	150	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g XP_027183830.1 91 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 150 57*****************766644468557***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence
MASSSSRPPP GKVETGGCSS SGGGGGGGET SEAVAAAATG AVMVGPIPGG GGAGDELAMY 60 RGLKKAKKER GCTAKERISK MPPCTAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN 120 KKGKQVYLGA YDDEEAAARA YDLAALKYWG PGTLINFPVT DYTRDLEEMQ NFSREDYLAS 180 LRRKSSGFSR GVSKYRPLSS RWDPQFGQFS GADYFTSIRY GAADDATAEN EYIGGFCIDR 240 KFDLTTYIKW WGTNKPRQVD PHAKSSEETS YRPGEDMSSE LKSVELTAKP TEPYEMPRLG 300 VPQEGKHRKG AVSAMSILSQ SAAFKSLQEK GLKKKAIDEN DENEDKNVIN KKDYGKGVEK 360 CSHDGGNERV GAGLGMTGGL PVPRNVYPLT PLLTAPLVTN YNSIDSLNDP VLWTSLVSVL 420 PCGMASNSTS TRLRVGFHLL EGFASSLHSR ILGVRLRKLH GLNLGCSYSW VPLPIFQIAV 480 FLIFNFLVLD M

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence

MASSSSRPPP GKVETGGCSS SGGGGGGGET SEAVAAAATG AVMVGPIPGG GGAGDELAMY  60
RGLKKAKKER GCTAKERISK MPPCTAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN  120
KKGKQVYLGA YDDEEAAARA YDLAALKYWG PGTLINFPVT DYTRDLEEMQ NFSREDYLAS  180
LRRKSSGFSR GVSKYRPLSS RWDPQFGQFS GADYFTSIRY GAADDATAEN EYIGGFCIDR  240
KFDLTTYIKW WGTNKPRQVD PHAKSSEETS YRPGEDMSSE LKSVELTAKP TEPYEMPRLG  300
VPQEGKHRKG AVSAMSILSQ SAAFKSLQEK GLKKKAIDEN DENEDKNVIN KKDYGKGVEK  360
CSHDGGNERV GAGLGMTGGL PVPRNVYPLT PLLTAPLVTN YNSIDSLNDP VLWTSLVSVL  420
PCGMASNSTS TRLRVGFHLL EGFASSLHSR ILGVRLRKLH GLNLGCSYSW VPLPIFQIAV  480
FLIFNFLVLD M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41710.1	1e-139	AP2 family protein