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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027183402.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 202aa MW: 23497.1 Da PI: 10.2511 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.9 | 3.7e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRr g+lKKA+ELSvLCdaeva+i+fs++gklye+ss XP_027183402.1 9 KRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIVFSPKGKLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 68.5 | 2.2e-23 | 81 | 171 | 10 | 100 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++a++ ++e+a L+k+ie L+++ R++lG++L+s s+ eLqq+e++Leksl+ iRs+K+ l++e +++l++ ek l++en +Lr k+ee XP_027183402.1 81 RMEQAQHFEEEVAILRKKIEILEETRRRFLGDGLDSSSVDELQQIENRLEKSLSIIRSRKSLLFRERMDQLKEEEKILRKENAELRGKYEE 171 56789*********************************************************************************99986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence |
MARGKTQLKR IENATSRQVT FSKRRSGLLK KAFELSVLCD AEVALIVFSP KGKLYEFSSS 60 SATSTIQRYQ KNIKNLCPSR RMEQAQHFEE EVAILRKKIE ILEETRRRFL GDGLDSSSVD 120 ELQQIENRLE KSLSIIRSRK SLLFRERMDQ LKEEEKILRK ENAELRGKYE EQQLELSISP 180 QPLPLRQVKE VETQLFIGPP KS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22950.1 | 1e-63 | MIKC_MADS family protein |