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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027183356.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 239aa MW: 27691.8 Da PI: 9.9352 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.7 | 2.6e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev viifs tgkly+y+s XP_027183356.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSGTGKLYDYAS 59 8***********************************************86 PP | |||||||
2 | K-box | 82.8 | 7.7e-28 | 82 | 170 | 10 | 98 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++ + +q+e+a L+++++ Lq ++R+llGe+L Ls+++L qLe+qLe slk +R kK+++l+++i++l +k + l+een +L +k+ XP_027183356.1 82 PASEIKFWQREVASLRQQLHYLQDTHRKLLGEELFGLSVNDLVQLENQLEVSLKGVRVKKEQVLTDEIKQLHRKGNHLHEENIELYNKV 170 578899*******************************************************************************9997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSG TGKLYDYAST 60 SMKSIIERYN RMKEEHHRLL NPASEIKFWQ REVASLRQQL HYLQDTHRKL LGEELFGLSV 120 NDLVQLENQL EVSLKGVRVK KEQVLTDEIK QLHRKGNHLH EENIELYNKV NLIHQENIQL 180 QKKVQEQENI NKSHGSICTT NVTSNMNELH VPMNLQLSQP HAQKNEAPKN PMKLGLELY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 5e-97 | MIKC_MADS family protein |