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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027181654.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | AP2 | ||||||||
Protein Properties | Length: 422aa MW: 47610.7 Da PI: 9.3995 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.4 | 9.9e-15 | 78 | 137 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a+ k++g XP_027181654.1 78 SRFRGVSRHRWTGRFEAHLWDkASWNAtqkKKgKQVYLGAYDEEEAAARAYDLAAIKYWG 137 789******************888888876447*************************98 PP | |||||||
2 | AP2 | 56.3 | 8.2e-18 | 180 | 231 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++gt eeAa+a++ a+ +++g XP_027181654.1 180 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAARAYDIAAIEYRG 231 89****99**********99966...3.6*************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence |
MELSIVKSEA SARSRSYCLV ESDVPETKCV RRRRRSPSAM TVLTGEASPG GRDQQQPQIQ 60 QVDQNNGANA TTTVKRSSRF RGVSRHRWTG RFEAHLWDKA SWNATQKKKG KQVYLGAYDE 120 EEAAARAYDL AAIKYWGTST FTNFPTSDYA NEIEIMQNLT KEEYLASLRR RSSGFARGVS 180 KYRGVARHHH NGRWEARIGR VFGNKYLYLG TYGTQEEAAR AYDIAAIEYR GINAVTNFDL 240 STYIKWLKPG SSSTASHDLL TSQPVETASI HNFNLTDHQE PHRHEFSFNP NSFKSGPLSV 300 PQKQEVIERK MPLSPCSMSS SPTALSLLLR SSMFREMVEK TSNADNDDQN DGNDLKNQPV 360 QGGGHQQDDF SFFPGSSLSF PYFYPFNSGH KLPELASEEK RVSPFSASRW NDAFNTSPFF 420 NS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 3e-81 | AP2 family protein |