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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027180140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 232aa MW: 26212.6 Da PI: 6.1677 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.8 | 2.8e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i+n + rqvtfskRr g++KKAeELSvLCda+va+i+fsstgkl+eyss XP_027180140.1 10 KIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALILFSSTGKLFEYSS 59 69**********************************************96 PP | |||||||
2 | K-box | 48.3 | 4.3e-17 | 93 | 172 | 20 | 99 |
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + ++L ke+ + +++R++ Ge+L+ L++ +LqqLe+ Le +l+++ +kK e ++++i++lq+k +l een++L+++++ XP_027180140.1 93 NCSRLSKEVAEKSHQLRQMRGEELQGLTVDDLQQLERSLEAGLNRVIEKKGEKIMKEINHLQRKGMQLMEENERLKQQVM 172 67889999999999***************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence |
MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALILFSS TGKLFEYSSS 60 SMKEILERHN LHSKNLEKME QPSLELQLVE NSNCSRLSKE VAEKSHQLRQ MRGEELQGLT 120 VDDLQQLERS LEAGLNRVIE KKGEKIMKEI NHLQRKGMQL MEENERLKQQ VMGVSNGSGQ 180 MAADDSENVL YEEGQSSESV TNVCSSTGGP QDYESSDTSL KLGLPYSGRL EK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-112 | MIKC_MADS family protein |