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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027179312.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 219aa MW: 25600.2 Da PI: 10.0632 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.9 | 3.1e-29 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ien++nrqvt+skRrngi+KKA+ELSvLCda+v++i++s t k++ey s XP_027179312.1 10 KIENSTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMLSDTKKFHEYTS 59 69**********************************************75 PP | |||||||
2 | K-box | 81.5 | 2e-27 | 71 | 167 | 1 | 97 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 yq++ g++l+++++e++q+ l++Lk+ +++L+r +R+++GedL++L+ ++ +L++++ +sl iR +K++++++q+++ +kk ++l+e++ +L XP_027179312.1 71 YQSAVGVDLWSTHYEKMQESLRRLKETNNKLRRDIRQRMGEDLNDLNWDNMCRLQEKIVDSLAIIRHRKYHVIKNQTDTYKKKVRNLKERHGNLL 165 78889999***********************************************************************************9997 PP K-box 96 kk 97 XP_027179312.1 166 YD 167 65 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence |
MGRGKIEIRK IENSTNRQVT YSKRRNGIFK KAHELSVLCD AKVSLIMLSD TKKFHEYTSP 60 SITTKKVMDD YQSAVGVDLW STHYEKMQES LRRLKETNNK LRRDIRQRMG EDLNDLNWDN 120 MCRLQEKIVD SLAIIRHRKY HVIKNQTDTY KKKVRNLKER HGNLLYDLEA RSCEDPKYGI 180 VDNARDYNSA LALADGGLSN LYALRLQSSH PNLQDLRLA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 3e-75 | MIKC_MADS family protein |