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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027178540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | AP2 | ||||||||
Protein Properties | Length: 676aa MW: 74599.6 Da PI: 7.0882 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.8 | 8.4e-16 | 331 | 390 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_027178540.1 331 SQFRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 390 789******************988886678446*************************98 PP | |||||||
2 | AP2 | 46.4 | 1e-14 | 435 | 484 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_027178540.1 435 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 484 9***************988532...5*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 676 aa Download sequence |
MKSLSNGNTS NNSNTNWLGF SLSPQMNKMD GGAAAAASAD HPSQTALPCS NAVSSSVALS 60 FSHPSSHFNY PGIYRGIEGD NAAAFYSPVT VMPLKSDGSL CIMEAMNVSQ PQGMLSTPKL 120 ENFFGGTTMG THHYEAGERR SMALSLDSMY YHQSLNHAPS SQDFLNNLQG NSRQQEQQRQ 180 QQIQVQQYAE YSPFRCHEFY QASEHGSKET HLAETNLQLP IMADNDLSGM KNWVSRNYLG 240 DHSLEPKMTG GGGENRCESG SFGAMGYGDL QSLSLSMSPG SQSSCITGSQ QISPTGTECV 300 TIETKKRGPE KVEQKQIVHR KSIDTFGQRT SQFRGVTRHR WTGRYEAHLW DNSCKKEGQS 360 RKGRQVYLGG YDMEEKAARA YDLAALKYWG PSTHINFPLE NYQHELEEMK SMARQEYVAH 420 LRRKSSGFSR GASMYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI 480 KFRGANAVTN FDISRYDVDR IMASSNLLAG ELARRNNNLE SSNDISIGNP SNLNCNEEVN 540 TTSKENNDNV LDWNVALHQF PLQKPGDPEH FKTSSFPVSV NDLMGMETLS TTAHQEAAGS 600 GKMMTHFSEP SSLVTSLSCS REGSPDKSNS LPMQFTVPPA ASKLFASPSP HTANPWISST 660 QMRPHVSVFA SWTDAS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-131 | AP2 family protein |