PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027175794.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

AP2

Protein Properties

Length: 539aa MW: 57923.2 Da PI: 7.9456

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027175794.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.1	6e-15	148	206	2	55
AP2 2 gykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 ++GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_027175794.1 148 IFRGVTRHRWTGRYEAHLWDnTCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 206 69****************665564477446***********************98 PP
2	AP2	47.2	5.7e-15	249	300	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_027175794.1 249 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 300 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence
MDSSHPNWLA FSLSNHPLFE AFNSPTSSSG AVIRAEEDNG NNGASVTAAA DLSTVLNCSS 60 PKLEDFLGGG SNGSCSSADV CQFGGGNQTS ALINADVYDS ELKSIAASFL RGYSTEQAES 120 QKQLAAVPLA PEPPAKKAVE TFGQRTSIFR GVTRHRWTGR YEAHLWDNTC RREGQSRKGR 180 QVYLGGYDKE EKAARAYDLA ALKYWGPTTT TNFPVSNYEK ELEEMKHMTR QEFVASLRRK 240 SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG 300 LNAVTNFDIS RYDVKSIASS NLPVGGISNN KSNNNNKTSS DSLSDNKSGD GSNRSDDRDH 360 SSATSVSFVS QPSTSALGFG LPIKQNSPST SDFWSSLGYH NNNVTAKIPT PTAIPLFQNP 420 STPNGTTLQC TTPSFNVDYP TNNNNNGYFS GGGYFQQQHQ QSNVLGGGGG GNGNGTGTNS 480 SSPSEQVPFV TRIALGSSNG TGSTYDAANF GNWISPTLHS FQPAKPNLSV FQTPIFGME

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence

MDSSHPNWLA FSLSNHPLFE AFNSPTSSSG AVIRAEEDNG NNGASVTAAA DLSTVLNCSS  60
PKLEDFLGGG SNGSCSSADV CQFGGGNQTS ALINADVYDS ELKSIAASFL RGYSTEQAES  120
QKQLAAVPLA PEPPAKKAVE TFGQRTSIFR GVTRHRWTGR YEAHLWDNTC RREGQSRKGR  180
QVYLGGYDKE EKAARAYDLA ALKYWGPTTT TNFPVSNYEK ELEEMKHMTR QEFVASLRRK  240
SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG  300
LNAVTNFDIS RYDVKSIASS NLPVGGISNN KSNNNNKTSS DSLSDNKSGD GSNRSDDRDH  360
SSATSVSFVS QPSTSALGFG LPIKQNSPST SDFWSSLGYH NNNVTAKIPT PTAIPLFQNP  420
STPNGTTLQC TTPSFNVDYP TNNNNNGYFS GGGYFQQQHQ QSNVLGGGGG GNGNGTGTNS  480
SSPSEQVPFV TRIALGSSNG TGSTYDAANF GNWISPTLHS FQPAKPNLSV FQTPIFGME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	1e-137	AP2 family protein