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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027174195.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | AP2 | ||||||||
Protein Properties | Length: 315aa MW: 34339.1 Da PI: 9.9328 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.4 | 2.2e-10 | 156 | 198 | 1 | 48 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaia 48 s+y+GV+++ +grW+A+ k++ ++ +fg++eeAa a++ XP_027174195.1 156 SKYRGVTRYFETGRWFAY---K---AsKKRGQYIRTFGSEEEAAMAYDI 198 89****************...5...356799****************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence |
MASSSTANGS PLANQSAAAE NSVKNIAPIV ASTQGESSKP SLVRGSTSAY SGVNKAKDDH 60 LYTSYAYVKT RGHSGRYADE EEAARVHDIV TLKCSGAAAK LNFPASHYRD VMRMMRDMDD 120 EELIAHVRRS GSGIARAGSK YHGVTRSSSQ FASAGSKYRG VTRYFETGRW FAYKASKKRG 180 QYIRTFGSEE EAAMAYDIET IKKKGWNAQT NFSLALYDVA GIRAGTANPP ITEEAAKYLQ 240 QATMWSSSGE AQGHSSSGYH SMLHQAQISF VRYSQTLMHI LSAHPNFQTH NVAGSSAQHM 300 FSHSSSSPFK PYVKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 9e-26 | AP2 family protein |