![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027174162.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 238aa MW: 27020.9 Da PI: 8.714 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.3 | 3.7e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien rqvtfskRr+g+lKKA+EL +LCdaev vi+fsstgklye++s XP_027174162.1 9 KKIENVNSRQVTFSKRRAGLLKKAKELAILCDAEVGVIVFSSTGKLYEFAS 59 68***********************************************86 PP | |||||||
2 | K-box | 68.6 | 2.1e-23 | 83 | 168 | 15 | 100 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ + +++ Lk+ei +Lq qR++ G++L+ L+++eLq+Le+qL++++ ++++K+++lleq+e+++ +e+++ en+aLr+++ee XP_027174162.1 83 NKTEPQADALKSEIAKLQLVQRQMTGKELGGLNFQELQHLEHQLHEGILAVKDRKEQVLLEQLEKSKLQEQKVVLENEALREQVEE 168 45567899***************************************************************************987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 238 aa Download sequence |
MGRGKIEIKK IENVNSRQVT FSKRRAGLLK KAKELAILCD AEVGVIVFSS TGKLYEFAST 60 RMEQILARYN TNPESSKLIT MENKTEPQAD ALKSEIAKLQ LVQRQMTGKE LGGLNFQELQ 120 HLEHQLHEGI LAVKDRKEQV LLEQLEKSKL QEQKVVLENE ALREQVEEYR LRLYRENGQL 180 GRKNSGVCSS TVCDCRSEKD GNSDTSLRLG LSVDICHKRK KPKTESTSND SETLMVLE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57390.1 | 7e-48 | MIKC_MADS family protein |