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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027174086.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | AP2 | ||||||||
Protein Properties | Length: 344aa MW: 38748.2 Da PI: 5.4419 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 24.7 | 5.7e-08 | 47 | 84 | 22 | 55 |
AP2 22 pseng....krkrfslgkfgtaeeAakaaiaarkkleg 55 ++n k ++++lg ++ +e Aa a++ a++k++g XP_027174086.1 47 NCWNEsqnkKGRQVYLGAYDDEEAAAHAYDLAALKYWG 84 44422334355*************************98 PP | |||||||
2 | AP2 | 52.3 | 1.4e-16 | 127 | 178 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g XP_027174086.1 127 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDMAAIEYRG 178 89****99**********99966...3.6*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence |
MTKISQQNQR NNSNLGNGIN NSAIKVKRTR KTVPRDSPPQ PHLWDKNCWN ESQNKKGRQV 60 YLGAYDDEEA AAHAYDLAAL KYWGQDTTLN FPLATYQKEL KEMEGQSREE YIGSLRRKSS 120 GFSRGVSKYR GVARHHHNGR WEARIGRVFG NKYLYLGTYA TQEEAAIAYD MAAIEYRGLN 180 AVTNFDLSRY IKWLRPNATT STTTSAAITE PNPNVDTDLM PTPDPMLASS SIYHPQTEQQ 240 PQPLDITTDI TLNQSRPASA TSALGLLLQS SKFKEMMEMT LAAECPVALT TPESEPTQCS 300 IPDDAQSFFT TPDMGSYIDQ SQEDIFSELI NPFMQPMLQF DFDV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 1e-83 | AP2 family protein |