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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027167848.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | AP2 | ||||||||
Protein Properties | Length: 664aa MW: 73237.1 Da PI: 6.8212 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.2 | 7.2e-12 | 324 | 380 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + ++ ++ k + g ++ +e+Aa+a++ a++k++g XP_027167848.1 324 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 380 78*******************433.44555535555.779999**************98 PP | |||||||
2 | AP2 | 46.2 | 1.1e-14 | 425 | 474 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_027167848.1 425 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 474 9***************988532...5************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 664 aa Download sequence |
MSNWLGFSLT PHLRIHDDDD EQNDFGGQSG EEVEQERCKE QQQNAGIPGP TITGGGGADQ 60 NQQRGGGSTP PTSVAMALRS DGSLCMMDTF GLPSSGAAHQ EDWRRYENAL DDATNLRNGE 120 GPKLEDFMGR CYTTNSPPPD PSSNIERRVY CQLPQQQQGE INVNIPPHCN DWEMEIERRE 180 HLITTTATPS SSRLIHPSYP FSYHMYSQDT ISNRCDPNSN MNGMLYHVPF DGATTVSGFK 240 SWLRQTPSPA DTNEFSVQES NQNNFEALSL GINPGAADQP GTSSLVLQVA DTNKKRDNSM 300 ANKSSAKDSA APRKSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCRKE GQTRKGRQGG 360 YDKEEKAARA YDLAALKYWG PTTHINFPLC SYGKELEDMK AMTRQEFVAH LRRKSSGFSR 420 GASMYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGTSAVTN 480 FDISRYDVRR ICSSSTLIAG DLAKAKRSPR NSRPSSVVDG NNSCASSASP QPLVAITNRE 540 ASQHGWNVMV WSSSTDHDQR LQDHETNSND MLQFSASGSR CSSTPQSPKD PVGSTGSPGK 600 NGGEFGVEGD YSQLYFSLEG PNSKPKYGDG NNNGSEDRDT SSNRLANTGS VHPVPMFTLW 660 NSSI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-120 | AP2 family protein |