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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027167303.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 242aa MW: 28205.9 Da PI: 9.55 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.3 | 1.3e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+ey++ XP_027167303.1 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 109.4 | 3.8e-36 | 80 | 174 | 6 | 100 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +e + + ++ e+akLk++ie Lqr+qRh++GedL++Lsl+eLq+Le+qL+++lk+iRs+Kn+l++e+i elqkk k+lqe+n+ L kk++e XP_027167303.1 80 LGGAEIESQGCWSLEHAKLKARIEVLQRNQRHYMGEDLDNLSLRELQNLEHQLDTALKHIRSRKNQLMFESIAELQKKDKALQEQNNVLAKKVKE 174 55556677789*********************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence |
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYATD 60 SCMERILERY ERYSYAERQL GGAEIESQGC WSLEHAKLKA RIEVLQRNQR HYMGEDLDNL 120 SLRELQNLEH QLDTALKHIR SRKNQLMFES IAELQKKDKA LQEQNNVLAK KVKEKEKEQA 180 QQPQWEQQNR HDLNSSSLVR SQPINSLSIS ETYHRGGDNE AEGTQSSQTN AVMHPWMLRQ 240 MN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 4e-98 | MIKC_MADS family protein |