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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027163557.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 266aa MW: 29933.1 Da PI: 8.4448 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.7 | 3.1e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien rqvtfskRrng+lKKA+EL vLCdaevaviifs+tgkl+e++s XP_027163557.1 9 KKIENANSRQVTFSKRRNGLLKKAYELGVLCDAEVAVIIFSNTGKLFEFAS 59 68***********************************************86 PP | |||||||
2 | K-box | 66.5 | 9.5e-23 | 93 | 172 | 20 | 99 |
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 e + Lk+eie+L+ ++ ++lG+dL+ L lkeLq++eqqL+++l++i+++K+++l++q+e+ ++e+++ +en++Lr+k+ XP_027163557.1 93 EEDILKEEIEKLKLKHSQMLGKDLDGLGLKELQEVEQQLNEGLSSIKARKERMLMDQLEQAMMQEQRTLQENQTLRTKIV 172 6688**************************************************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence |
MGRGKIEIKK IENANSRQVT FSKRRNGLLK KAYELGVLCD AEVAVIIFSN TGKLFEFASS 60 SMPQIIARYN KCFEPSDCAT VDHQPEPFQG PKEEDILKEE IEKLKLKHSQ MLGKDLDGLG 120 LKELQEVEQQ LNEGLSSIKA RKERMLMDQL EQAMMQEQRT LQENQTLRTK IVELEHLLPS 180 SGHPAPNYID YYPVEKANMP AKGLTAHPDK ALTSVENEDS DTNLRLGLSS GTFEKRKAPE 240 AADSGAVGAQ KRKRRTRSST YGRQIN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 235 | 255 | KRKAPEAADSGAVGAQKRKRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 5e-62 | MIKC_MADS family protein |