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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027163493.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 221aa MW: 25373.9 Da PI: 9.5233 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.5 | 1.5e-27 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ri+n++ rqvtfskRrng+lKKA+EL vLCdaev v+ifsst klyey+ XP_027163493.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAVLCDAEVGVVIFSSTSKLYEYA 58 8***********************************************8 PP | |||||||
2 | K-box | 80.5 | 4e-27 | 84 | 169 | 12 | 97 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 ++ + +q+e++ L+++++nLq+ +R+l+Ge+L Ls+k+Lq Le+qLe sl+ iR kK+++l+++i+el +k +++en +L kk XP_027163493.1 84 SEVKFWQREATILRQQLHNLQEIHRQLMGEELYGLSVKDLQGLENQLEMSLRGIRMKKEQILTDEIRELHRKGCLIHQENAELYKK 169 67899******************************************************************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAVLCD AEVGVVIFSS TSKLYEYANT 60 SMKSVLERYS KAKEERHQLL SPLSEVKFWQ REATILRQQL HNLQEIHRQL MGEELYGLSV 120 KDLQGLENQL EMSLRGIRMK KEQILTDEIR ELHRKGCLIH QENAELYKKA YSTSNSNATH 180 GNTITPYGFA ITEEQHAPIH LQLSQPESQN FVTSEGTSES R |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 1e-95 | MIKC_MADS family protein |