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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027161167.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 230aa MW: 26447.3 Da PI: 9.2005 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.3 | 1.3e-30 | 24 | 73 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss XP_027161167.1 24 RIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSQKGKLYEFSS 73 8***********************************************96 PP | |||||||
2 | K-box | 68.3 | 2.4e-23 | 96 | 184 | 9 | 97 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 e+ ++l+ e+ ++ + ie L+ +qR+llG+dL+s sl+eLqq+ +qLe+sl+++R +K++l++e+ie+l+ ke l een +L++k XP_027161167.1 96 DIEKYVQELKLEAINMANTIEFLEASQRKLLGQDLGSSSLEELQQIDSQLERSLTNVRGRKTQLFKEEIERLRAKEMLLLEENARLSQK 184 346668999******************************************************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence |
MLVGDLGSHT TCRKMVRGKI QMRRIENATS RQVTFSKRRN GLLKKAYELS VLCDAEVALI 60 IFSQKGKLYE FSSSNMQKTI DKYRGCVKED QRSDQDIEKY VQELKLEAIN MANTIEFLEA 120 SQRKLLGQDL GSSSLEELQQ IDSQLERSLT NVRGRKTQLF KEEIERLRAK EMLLLEENAR 180 LSQKCGLESW HAPAKRKEIG SCSQSTQSSE VETGLFIGLP ETRVLEYRRF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62165.3 | 3e-83 | MIKC_MADS family protein |