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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027160328.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 220aa MW: 24836.6 Da PI: 8.6464 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.1 | 2.1e-27 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 kri+n + rqvtfskRr g++KKA+ELS+LCdae+a+i+fs tgkl+ey XP_027160328.1 9 KRIDNLTARQVTFSKRRRGLFKKAQELSTLCDAEIALIVFSATGKLFEYG 58 79**********************************************95 PP | |||||||
2 | K-box | 53.7 | 9e-19 | 87 | 172 | 14 | 99 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++ ++ +a L +ei++ e+Rhl+Ge+L Ls+++L +Le+ +e +l++i ++K + ++++i l+kke l+een +Lr+k++ XP_027160328.1 87 TQRENHTHAMLAEEIKEKTAELRHLKGEELVGLSMEDLVKLEKLVEAGLSRIAKTKGDKFMKEIGILKKKEALLKEENAKLRQKVA 172 577788999999*****9******************************************************************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence |
MVRQRIQIKR IDNLTARQVT FSKRRRGLFK KAQELSTLCD AEIALIVFSA TGKLFEYGSS 60 SMMQVIERHR LCSEDIGRQD KHPPHLTQRE NHTHAMLAEE IKEKTAELRH LKGEELVGLS 120 MEDLVKLEKL VEAGLSRIAK TKGDKFMKEI GILKKKEALL KEENAKLRQK VAGTSEDETP 180 LLEQGISSES VTRLSDQVGS CPQDLNNSDT FLQLGLPCPN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 5e-62 | MIKC_MADS family protein |