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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027160324.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 264aa MW: 29700.3 Da PI: 8.0099 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.6 | 2.8e-27 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 kri+n + rqvtfskRr g++KKA+ELS+LCdae+a+i+fs tgkl+ey XP_027160324.1 9 KRIDNLTARQVTFSKRRRGLFKKAQELSTLCDAEIALIVFSATGKLFEYG 58 79**********************************************95 PP | |||||||
2 | K-box | 53.1 | 1.3e-18 | 87 | 172 | 14 | 99 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++ ++ +a L +ei++ e+Rhl+Ge+L Ls+++L +Le+ +e +l++i ++K + ++++i l+kke l+een +Lr+k++ XP_027160324.1 87 TQRENHTHAMLAEEIKEKTAELRHLKGEELVGLSMEDLVKLEKLVEAGLSRIAKTKGDKFMKEIGILKKKEALLKEENAKLRQKVA 172 577788999999*****9******************************************************************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence |
MVRQRIQIKR IDNLTARQVT FSKRRRGLFK KAQELSTLCD AEIALIVFSA TGKLFEYGSS 60 SMMQVIERHR LCSEDIGRQD KHPPHLTQRE NHTHAMLAEE IKEKTAELRH LKGEELVGLS 120 MEDLVKLEKL VEAGLSRIAK TKGDKFMKEI GILKKKEALL KEENAKLRQK VAGTSEDETP 180 LLEQGISSES VTRLSDQVGS CPQDLNNSDT FLQLGEDEIA VAEDRIYNLS IAGSMIPRNC 240 SLCCIIFLKK NNMHVCQACS SLST |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 2e-59 | MIKC_MADS family protein |