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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027159621.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 202aa MW: 22951.4 Da PI: 9.2876 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.7 | 8.2e-30 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ XP_027159621.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFG 58 8**********************************************95 PP | |||||||
2 | K-box | 65.3 | 2.1e-22 | 79 | 154 | 6 | 81 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 ++ +e+++++l+qe a + k+ie L+ ++R+llGe+L s++++eLqqLe+qLe+s++ iR++K+++l ++ ++l XP_027159621.1 79 NNPSAEQNMQQLKQETASMVKKIELLEASKRKLLGEGLVSCTVEELQQLERQLERSVNCIRARKEKVLEAENDKLL 154 344899***************************************************************9988775 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence |
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFGSS 60 SMKEIIERYQ KHAKDVRANN PSAEQNMQQL KQETASMVKK IELLEASKRK LLGEGLVSCT 120 VEELQQLERQ LERSVNCIRA RKEKVLEAEN DKLLEKCGAE PPQTSKENTE IVPCTESSEV 180 SDVETGLFIG PPERRNKLVL KN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 2e-72 | MIKC_MADS family protein |