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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027153537.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 240aa MW: 27571.7 Da PI: 10.4329 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.4 | 4.5e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+ XP_027153537.1 9 KRIENKISRQVTFSKRRSGLLKKANEISVLCDAEVALIVFSTKGKLFEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 97 | 2.9e-32 | 83 | 174 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++ +++ e+ kL ++ie Lqr+++h++GedL+sLsl+eLq LeqqL++++++iR++Kn++++e+i el+kkek lqe+n L k+++e XP_027153537.1 83 SGPEQQDNWSVEHPKLMSRIELLQRNIKHYVGEDLDSLSLRELQTLEQQLDTAMRRIRTRKNQVMHESIAELRKKEKTLQEQNSLLAKQIKE 174 5567789**********************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence |
MGRGRVQLKR IENKISRQVT FSKRRSGLLK KANEISVLCD AEVALIVFST KGKLFEYSTE 60 SSMERILERY ERYSYAEKRL SGSGPEQQDN WSVEHPKLMS RIELLQRNIK HYVGEDLDSL 120 SLRELQTLEQ QLDTAMRRIR TRKNQVMHES IAELRKKEKT LQEQNSLLAK QIKENDKIVM 180 ERLHLIQRSS ALVLSEPAPG SVPVPSLAAG PFQVSGPTGE EDGRRGKNTL MPPWLVRRMS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 3e-91 | MIKC_MADS family protein |