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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027151191.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 239aa MW: 27538.2 Da PI: 8.3113 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.6 | 2.5e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+i+fs++gklye++s XP_027151191.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIVFSNRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 91.5 | 1.5e-30 | 80 | 171 | 7 | 98 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++++ +s +qe+ kLk+++e Lq++qRhllGedL +L k+L qLe+qL+ sl++iRs+K++++l+q+++lq+ke++l e nkaLr+k XP_027151191.1 80 MNQSSKDPQSDYQEYLKLKARVEVLQQSQRHLLGEDLAQLGAKQLDQLERQLDASLRQIRSTKTQHMLDQLSDLQQKERSLMEVNKALRNKQ 171 45788999*********************************************************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence |
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIVFSN RGKLYEFCSS 60 SSMSKTLERY HRCSYADAGM NQSSKDPQSD YQEYLKLKAR VEVLQQSQRH LLGEDLAQLG 120 AKQLDQLERQ LDASLRQIRS TKTQHMLDQL SDLQQKERSL MEVNKALRNK QLEETTAAYQ 180 LSWDSEEHNL RHRSQTIHPE GFFQPLECNS SIMNYNMVVA DAEAEPTQNP SGILPGWML |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.1 | 1e-95 | MIKC_MADS family protein |