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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027150624.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 210aa MW: 24545.2 Da PI: 9.2278 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90 | 1.3e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+ nrqvt+skRr+gi+KKA+E+ vLCda+v++iif+++gk++ey+s XP_027150624.1 9 KRIENSNNRQVTYSKRRTGIMKKAKEITVLCDAKVSLIIFGTSGKMHEYIS 59 79***********************************************86 PP | |||||||
2 | K-box | 79.7 | 7.1e-27 | 71 | 167 | 1 | 97 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 yq+s+gk+l++ak+e+l++e++++kke++++q e+Rhl+Ged++sL++keL+ Le++Le++l R+k++e++++ ++ + e+e+++ + + XP_027150624.1 71 YQRSTGKKLWDAKHENLSNEIDRVKKENDSMQIELRHLKGEDITSLNYKELMILEDALENGLAGLREKQSEIIKMIRKTGEMLEDENKQLQYIWH 165 789999*******************************************************************9999999999998888877666 PP K-box 96 kk 97 ++ XP_027150624.1 166 QQ 167 65 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence |
MGRGKIEIKR IENSNNRQVT YSKRRTGIMK KAKEITVLCD AKVSLIIFGT SGKMHEYISP 60 STNLVEMLDA YQRSTGKKLW DAKHENLSNE IDRVKKENDS MQIELRHLKG EDITSLNYKE 120 LMILEDALEN GLAGLREKQS EIIKMIRKTG EMLEDENKQL QYIWHQQEMA NMKGAIGERD 180 DVYQRVRDYP SQMPFAFRVQ PMQPNLHERI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 1e-87 | MIKC_MADS family protein |