![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027149663.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 224aa MW: 25820.4 Da PI: 9.8503 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.9 | 7.5e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvt+skRrng++KKA+EL vLCda+v++i++sst+kl+ey+s XP_027149663.1 9 KRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMVSSTQKLHEYIS 59 79***********************************************86 PP | |||||||
2 | K-box | 95.5 | 8.4e-32 | 71 | 168 | 1 | 98 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 yqk+ g++l+++++e++q++l+kLk+ ++nL++e+R+++Ge+L++Ls+ eL L +++++sl+ iR++K++++ +qie+ +kk ++++e++++L XP_027149663.1 71 YQKAVGVDLWSSHYEKMQEQLKKLKDVNRNLRKEIRQRMGESLNDLSYDELGFLMEDVDNSLRAIRERKYKVIGNQIETHKKKLRNVEEIHRNLL 165 799999***************************************************************************************98 PP K-box 96 kkl 98 +l XP_027149663.1 166 LEL 168 776 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 224 aa Download sequence |
MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMVSS TQKLHEYISP 60 TATTKQLVDQ YQKAVGVDLW SSHYEKMQEQ LKKLKDVNRN LRKEIRQRMG ESLNDLSYDE 120 LGFLMEDVDN SLRAIRERKY KVIGNQIETH KKKLRNVEEI HRNLLLELDA RGEDPHYGLV 180 DNGGGDYNPV LGYPRVLALR FQPTQPNLHS GGGSSDLTTF ALLE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54340.1 | 9e-97 | MIKC_MADS family protein |