PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027148114.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

AP2

Protein Properties

Length: 678aa MW: 74740.6 Da PI: 6.6999

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027148114.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.9	3.9e-16	324	383	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_027148114.1 324 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 383 78*****************988886678446***********************98 PP
2	AP2	46.4	9.8e-15	426	477	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_027148114.1 426 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 477 57**************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 678 aa Download sequence
MKSVNDNNNG SDASSNNNCN APNWLGFSLS PHMKMEVTSS SSSSEHHHHQ FNHQNQPPPT 60 STSTDVPTSF CLSSPPHLNN IASPVCFGVS ENGGFHHAPL SVMPIRSDGS LCIMEALRRS 120 QTEAMGPNSS PKLENFFGGA TMGTHQYGSQ DRETMVLSLD SIFYNQNVEP EGEPIRQENP 180 YFSGLQCQDM YQHPLHEEND ETRVADCDTQ IPTMTGEDLK NWVAVDYSDQ HALDQQQLNT 240 APMVEGGNGS GSGSVGSVGC GDLQSLSLSM SPGSQSSCVT APRHISPTEA ECLAIETKKR 300 SCGKVAQKQP VHRKSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCKKE GQTRKGRQVY 360 LGGYDMEEKA ARAYDLAALK YWGPSTHINF PLENYQQELE GMKNMSRQEY VAHLRRKSSG 420 FSRGASIYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGVNA 480 VTNFDISRYD VERIMASNTL PAGELARRNK ETEPNNETIE YANAARKSEE CFQPERNANV 540 SDWKMAPYQP PQQQNLPMDS FNEKIMNVVH YQNPSYSTAL HGLIGIDSGN SSRGIVDESA 600 KLGAHFSNSS SLVTSLNSSR EASPDRSGTS MLFAAKPTSA ANYVNPTANV GSWIPSAQLK 660 PVPISMAHLP VFAAWGDI

Sequence ? help Back to Top

Protein Sequence Length: 678 aa Download sequence

MKSVNDNNNG SDASSNNNCN APNWLGFSLS PHMKMEVTSS SSSSEHHHHQ FNHQNQPPPT  60
STSTDVPTSF CLSSPPHLNN IASPVCFGVS ENGGFHHAPL SVMPIRSDGS LCIMEALRRS  120
QTEAMGPNSS PKLENFFGGA TMGTHQYGSQ DRETMVLSLD SIFYNQNVEP EGEPIRQENP  180
YFSGLQCQDM YQHPLHEEND ETRVADCDTQ IPTMTGEDLK NWVAVDYSDQ HALDQQQLNT  240
APMVEGGNGS GSGSVGSVGC GDLQSLSLSM SPGSQSSCVT APRHISPTEA ECLAIETKKR  300
SCGKVAQKQP VHRKSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCKKE GQTRKGRQVY  360
LGGYDMEEKA ARAYDLAALK YWGPSTHINF PLENYQQELE GMKNMSRQEY VAHLRRKSSG  420
FSRGASIYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGVNA  480
VTNFDISRYD VERIMASNTL PAGELARRNK ETEPNNETIE YANAARKSEE CFQPERNANV  540
SDWKMAPYQP PQQQNLPMDS FNEKIMNVVH YQNPSYSTAL HGLIGIDSGN SSRGIVDESA  600
KLGAHFSNSS SLVTSLNSSR EASPDRSGTS MLFAAKPTSA ANYVNPTANV GSWIPSAQLK  660
PVPISMAHLP VFAAWGDI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-152	AP2 family protein