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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027148112.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 205aa MW: 23353.3 Da PI: 9.276 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.2 | 7e-26 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ien rqvtf+kRr+g+lKKA+ELSvLCdae+ v+ifs +gklye + XP_027148112.1 9 KKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVVIFSAHGKLYELA 58 68*********************************************965 PP | |||||||
2 | K-box | 68 | 3.1e-23 | 85 | 174 | 11 | 100 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 e++ + e++kLk+eie Lq+++R + G + ++++l eL Le++Le+ + +iRs K+++++++i+ l++ke l+ +nk+L++k++e XP_027148112.1 85 EKEPLDPKDEISKLKQEIEVLQKSLRYMSGGGAGTMTLDELDVLEKHLETWIYHIRSAKMDIMFQEIQLLKNKEGILKAANKYLQEKMDE 174 555556689******************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence |
MARGKIQMKK IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGVVIFSA HGKLYELATK 60 GTMQGLIDKY GKTCRGRAPA EQAKEKEPLD PKDEISKLKQ EIEVLQKSLR YMSGGGAGTM 120 TLDELDVLEK HLETWIYHIR SAKMDIMFQE IQLLKNKEGI LKAANKYLQE KMDEQHSVVT 180 DMVPLMTTAT NIQYPLTIHS EIYQF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 3e-86 | MIKC_MADS family protein |