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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027148082.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 227aa MW: 25609.5 Da PI: 6.7735 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.5 | 6.2e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeEL vLCda+va+iifs tgkl+e++s XP_027148082.1 9 KKIDNITARQVTFSKRRRGLFKKAEELAVLCDADVALIIFSATGKLFEFAS 59 68***********************************************86 PP | |||||||
2 | K-box | 52.7 | 1.9e-18 | 93 | 171 | 21 | 99 |
K-box 21 lakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + +L ke+ +++R+++GedL+ L+++eLqqLe+ Le +l+++ ++K e ++++i+ lqkk el eenk+L++k++ XP_027148082.1 93 HVRLSKEVADRTHQLRQMKGEDLQGLKIEELQQLEKVLEAGLTRVLQTKGERIMNEINALQKKGAELFEENKQLKQKMA 171 56888888888999**************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
MAREKIKIKK IDNITARQVT FSKRRRGLFK KAEELAVLCD ADVALIIFSA TGKLFEFASS 60 SMSDILGKYK LHSSNLEKIE QPSLELQLEN SCHVRLSKEV ADRTHQLRQM KGEDLQGLKI 120 EELQQLEKVL EAGLTRVLQT KGERIMNEIN ALQKKGAELF EENKQLKQKM AMLYEGKRPV 180 IPDLDKDMLI EEGQSSESIT NVCSCNSGPP PEDDCSDTSL KLGLPFN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-100 | MIKC_MADS family protein |