PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024996912.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GATA
Protein Properties Length: 298aa    MW: 33586.5 Da    PI: 7.238
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024996912.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.95.8e-18185219135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  XP_024996912.1 185 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 219
                     *******************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    
MDIYGMSSAG QDFLGVDELF DFSDDRDDLF SSSTTTAATD AFHNITSSTA SASQFQYIFN  60
NNNNTTTTTT TTNYHHSTDF TDHFCVPNDE VAELEWLSKF VDDSSSDFPA NNIAGTINFR  120
PENTSIHSRS RSKRTRAPSN NNSWTSTPVP TTQISETSKT KRETYSSTTS SSCDTTSETG  180
IVRRCTHCAS EKTPQWRTGP LGPKTLCNAC GVRYKSGRLV PEYRPAASPT FVLTQHSNSH  240
RKVMELRRQK EMILGHHHHQ QQQHLPPSEH QLYGGGHHHH HHRQQQQRLH HGSNYEVC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129134RSRSKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.12e-66GATA family protein