PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024996188.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GATA
Protein Properties Length: 301aa    MW: 33720.4 Da    PI: 9.5998
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024996188.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.82.9e-18234267134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++C  tkTp+WR+gp g+ktLCnaCG++yr+ +
  XP_024996188.1 234 CAHCEITKTPQWREGPMGPKTLCNACGVRYRSGR 267
                     *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MVRGFAMESQ DKRMCKSESA FSGVTIDYNH RVYDEDCFGD ILNMFDFPME SVEGDGFAED  60
WASKLGPIPS EVFKELVPPV SQIGVGNSYG SSTDFPFEYP ALNSRNLQPK YQLNLDEEPS  120
KDCQIGRISQ LKQQPTFVEK KGVYPSAAAF EAPSPNSVLE SRSSSSNSKG ISFGIEISIP  180
VRTRSKRLRP TTNPWLVSPH LILPNKDKKR KKPSVNIDPK RSVERSNVVG IKKCAHCEIT  240
KTPQWREGPM GPKTLCNACG VRYRSGRLYP EYRPAASPTF VPSLHSNSHR KVVEMRQKAV  300
K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182187RTRSKR
2208212KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.24e-43GATA family protein