PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995508.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 644aa MW: 73090.2 Da PI: 4.835

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995508.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180	6.2e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv +yLk+k++g+k+el evi+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v XP_024995508.1 6 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EVIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRNVN 99 79**************************.99***********6434555777*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s ++++vg+kktLv+y+grap+g ++dWvmheyrl XP_024995508.1 100 S-QSRAVGMKKTLVYYRGRAPHGARSDWVMHEYRL 133 .999***************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence
MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIELEVIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRNVNS QSRAVGMKKT LVYYRGRAPH 120 GARSDWVMHE YRLDERECES ESGLKLQDAY SLCRVFKKSL NAPKTTVGVH YAATASDHSS 180 SMDLYSEGGR GGEDIETCNY PTPIASSSSN INHGSPHNLS ETSDGRWMQY LSEEAFAFPN 240 PSFVNYGNVT YPPSKVDIAL ECARLQQRLS MPPLQVQDLP QQGATSYVDL MNIPQTSSSM 300 REMATANGPQ QDILQEILSV AQVSQDLINQ NTWGGGYSGH HEDDFSFLAN NNSNNQMQDM 360 DTFRFMGDEQ NMRSIEVGGV NEQLGTDRMV ENLRWVGMSN KDHEMTFWDD YKTVPVESVP 420 SFQREENEVQ GESSHHNNFE STEDHFSLGF TTEDNNNSND NFLDEGDLDD FTTTPSFEIY 480 EKTKVSHGLI VSTRQVSETF FHQIVPSQTV KVQLNPGMIH DQTVAKPDGQ TRLNKKVLYD 540 KFKIYADSKP LEGTTKKTMS PFVNLVSLLL ICCFYLEEST EEDGDMKFKY EVGSPAGNNN 600 EMRDHEEEEK NEGWSISSVV LEKVIWPCVT LALAFSTIWV HHNY

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence

MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIELEVIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRNVNS QSRAVGMKKT LVYYRGRAPH  120
GARSDWVMHE YRLDERECES ESGLKLQDAY SLCRVFKKSL NAPKTTVGVH YAATASDHSS  180
SMDLYSEGGR GGEDIETCNY PTPIASSSSN INHGSPHNLS ETSDGRWMQY LSEEAFAFPN  240
PSFVNYGNVT YPPSKVDIAL ECARLQQRLS MPPLQVQDLP QQGATSYVDL MNIPQTSSSM  300
REMATANGPQ QDILQEILSV AQVSQDLINQ NTWGGGYSGH HEDDFSFLAN NNSNNQMQDM  360
DTFRFMGDEQ NMRSIEVGGV NEQLGTDRMV ENLRWVGMSN KDHEMTFWDD YKTVPVESVP  420
SFQREENEVQ GESSHHNNFE STEDHFSLGF TTEDNNNSND NFLDEGDLDD FTTTPSFEIY  480
EKTKVSHGLI VSTRQVSETF FHQIVPSQTV KVQLNPGMIH DQTVAKPDGQ TRLNKKVLYD  540
KFKIYADSKP LEGTTKKTMS PFVNLVSLLL ICCFYLEEST EEDGDMKFKY EVGSPAGNNN  600
EMRDHEEEEK NEGWSISSVV LEKVIWPCVT LALAFSTIWV HHNY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-157	NAC family protein