PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024994194.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | GATA | ||||||||
Protein Properties | Length: 340aa MW: 37318.8 Da PI: 5.0356 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.9 | 1.3e-18 | 258 | 291 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C++ kTp+WR gp g+ktLCnaCG+++++ + XP_024994194.1 258 CTHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGR 291 *******************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence |
MECIEARALK SSFLSEIVGM KSIQQASFED IWCVAGINNV VNVSSDEFSV DDLLDLSDKD 60 FSNSGDGSFE ESSEEDFVSV SSQDNDGNSM NSGNFSSTGD LVSLTADELA VPIDDMESLE 120 WLSQIVDDSV SEVPLLCPPT NLKEEAGEYA VNRFEPVVKL ATRSFTVLGL PYPVPRKCRS 180 ERKRKAGRVW SAGSRSLTES SSSSSSSHDS SITSPMLFLN PLQLIEFFKK PPSAKKQKKN 240 QAFETGPGSS ESLSQRRCTH CQVQKTPQWR TGPLGPKTLC NACGVRFKSG RLFPEYRPAC 300 SPTFSGDVHS NSHRKVLEMR KKKETEVEPG LIMTVQNASS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 4e-51 | GATA family protein |