PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024994193.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GATA
Protein Properties Length: 340aa    MW: 37318.8 Da    PI: 5.0356
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024994193.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.91.3e-18258291134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++C++ kTp+WR gp g+ktLCnaCG+++++ +
  XP_024994193.1 258 CTHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGR 291
                     *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MECIEARALK SSFLSEIVGM KSIQQASFED IWCVAGINNV VNVSSDEFSV DDLLDLSDKD  60
FSNSGDGSFE ESSEEDFVSV SSQDNDGNSM NSGNFSSTGD LVSLTADELA VPIDDMESLE  120
WLSQIVDDSV SEVPLLCPPT NLKEEAGEYA VNRFEPVVKL ATRSFTVLGL PYPVPRKCRS  180
ERKRKAGRVW SAGSRSLTES SSSSSSSHDS SITSPMLFLN PLQLIEFFKK PPSAKKQKKN  240
QAFETGPGSS ESLSQRRCTH CQVQKTPQWR TGPLGPKTLC NACGVRFKSG RLFPEYRPAC  300
SPTFSGDVHS NSHRKVLEMR KKKETEVEPG LIMTVQNASS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.24e-51GATA family protein