PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024993196.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

GRF

Protein Properties

Length: 350aa MW: 38752 Da PI: 7.8951

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024993196.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	72.3	5.7e-23	146	190	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep+rCrRtDGKkWRCs+++++++ +C+rH h++r rsrk++e+ XP_024993196.1 146 DPEPWRCRRTDGKKWRCSKDAMPDQRYCDRHAHKNRPRSRKHVET 190 79****************************************997 PP
2	QLQ	50.1	8.1e-18	96	128	3	35
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 FTa+Q+ +++sQ ++yKy++a+ PvPp+Ll+++ XP_024993196.1 96 FTASQWKEFESQTMIYKYMIASIPVPPQLLLPL 128 ******************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MSCYDYDTRG DNGGYQEPAS ECNVGLGLNM QYLNKKTSFN HPQYRSSAEI DGGNGGSSSS 60 SSGRRLLDNR TDSCNQIASG TCFNFITGGE MGKMLFTASQ WKEFESQTMI YKYMIASIPV 120 PPQLLLPLSV QSNRSGTDLR FSNGSDPEPW RCRRTDGKKW RCSKDAMPDQ RYCDRHAHKN 180 RPRSRKHVET QSHNTKLPSN PLRNNHNYHP ILPPAPSMPP TTSCQQSRFM KSDAIPLSSL 240 NQKIQKPMVS PSVGSKRDHF CHQDLEGNHQ DDCSLALSMQ SGGNDVSEDQ DFFQMGIGML 300 NADGSNPPNQ WVNQGSWLGG PLGEALCLGI ASTQKQPPNV SSLNGHSNQE

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MSCYDYDTRG DNGGYQEPAS ECNVGLGLNM QYLNKKTSFN HPQYRSSAEI DGGNGGSSSS  60
SSGRRLLDNR TDSCNQIASG TCFNFITGGE MGKMLFTASQ WKEFESQTMI YKYMIASIPV  120
PPQLLLPLSV QSNRSGTDLR FSNGSDPEPW RCRRTDGKKW RCSKDAMPDQ RYCDRHAHKN  180
RPRSRKHVET QSHNTKLPSN PLRNNHNYHP ILPPAPSMPP TTSCQQSRFM KSDAIPLSSL  240
NQKIQKPMVS PSVGSKRDHF CHQDLEGNHQ DDCSLALSMQ SGGNDVSEDQ DFFQMGIGML  300
NADGSNPPNQ WVNQGSWLGG PLGEALCLGI ASTQKQPPNV SSLNGHSNQE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24150.1	2e-26	GRF family protein