PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024992692.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Protein Properties

Length: 807aa MW: 88320.1 Da PI: 7.9612

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024992692.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.9	3.8e-18	361	460	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpkk+ae++ ++++e+ l+++d++g+ W +++++ +++s++yvl+ G ++ +L++gD+v+F++ + e++ XP_024992692.1 361 FEKVLSASDAGRIGRLVLPKKCAEAYlpPISQPEGYPLVVQDLKGKDWVLQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLE-PEGK 453 99************************666678889***********99899999999.*******************766.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ XP_024992692.1 454 LVMGFRK 460 7777776 PP

Sequence ? help Back to Top
Protein Sequence Length: 807 aa Download sequence
MASSSGSTKV CFNSTCKEVL EVPRQGWLCR TGDFADLCDR CSSAFKDGKF CDTYHMNASG 60 WRCCESCGKQ IHCGCIVSFH MFILLDAGGI ECLNCAKTEF ILVKMILPPS EKKCPRFYFS 120 FSQNKSPLPK TPNPTWPSAS HFLQGPAERI RDISSKNWRS ISGSGPVPWR QAPSLFNASK 180 VQPEFQSVLG SIDNPLATEQ LSSCSLGKST ANEPSEKLVN ESWQVGASEM AAARARAIGI 240 QYDGQCNLFG DVPRQSFFYT NELPTSLSSL PARMVAQDQK SEKGKVSGIH VQHLCPLPLV 300 GKQFSNNNGS GPSLEAQAHN AKSRGETRGR NQLLPRYWPR ITDQELQQIS GGTNAKITPL 360 FEKVLSASDA GRIGRLVLPK KCAEAYLPPI SQPEGYPLVV QDLKGKDWVL QFRFWPNNNS 420 RMYVLEGVTP CIQSMQLQAG DTVTFSRLEP EGKLVMGFRK ASLASPSDQG NETVSTRNED 480 PSKGTISFKS RNPDGTWSEV DKISIRAKRK KGAKTGSNCK QLKLNGEEIL QLNVTLEQVQ 540 ELLQPPLINA PTIVVVEGVE FEDYQEAPII GSPAIFSTNH QGSICSMEVK PTPERLQHML 600 PMINHASSRN INSENPEPVK MMDGLDALAD LAIQDGEAIP TLSQATTRHP RHRPGCTCIV 660 CIQSPSATKH KPTCTCNVCL AVKRFTQTPM VLHGSKDSEK EAGNSVRVPS QVPYADILRH 720 TQTGNSGHDH KTAAGGSSEN NPDGEKPSTP FKSQNIDLNT QPEREEESSS PVLESIGITS 780 LAPEPTQRCI RQMKLSINGI TDGNHAL

Sequence ? help Back to Top

Protein Sequence Length: 807 aa Download sequence

MASSSGSTKV CFNSTCKEVL EVPRQGWLCR TGDFADLCDR CSSAFKDGKF CDTYHMNASG  60
WRCCESCGKQ IHCGCIVSFH MFILLDAGGI ECLNCAKTEF ILVKMILPPS EKKCPRFYFS  120
FSQNKSPLPK TPNPTWPSAS HFLQGPAERI RDISSKNWRS ISGSGPVPWR QAPSLFNASK  180
VQPEFQSVLG SIDNPLATEQ LSSCSLGKST ANEPSEKLVN ESWQVGASEM AAARARAIGI  240
QYDGQCNLFG DVPRQSFFYT NELPTSLSSL PARMVAQDQK SEKGKVSGIH VQHLCPLPLV  300
GKQFSNNNGS GPSLEAQAHN AKSRGETRGR NQLLPRYWPR ITDQELQQIS GGTNAKITPL  360
FEKVLSASDA GRIGRLVLPK KCAEAYLPPI SQPEGYPLVV QDLKGKDWVL QFRFWPNNNS  420
RMYVLEGVTP CIQSMQLQAG DTVTFSRLEP EGKLVMGFRK ASLASPSDQG NETVSTRNED  480
PSKGTISFKS RNPDGTWSEV DKISIRAKRK KGAKTGSNCK QLKLNGEEIL QLNVTLEQVQ  540
ELLQPPLINA PTIVVVEGVE FEDYQEAPII GSPAIFSTNH QGSICSMEVK PTPERLQHML  600
PMINHASSRN INSENPEPVK MMDGLDALAD LAIQDGEAIP TLSQATTRHP RHRPGCTCIV  660
CIQSPSATKH KPTCTCNVCL AVKRFTQTPM VLHGSKDSEK EAGNSVRVPS QVPYADILRH  720
TQTGNSGHDH KTAAGGSSEN NPDGEKPSTP FKSQNIDLNT QPEREEESSS PVLESIGITS  780
LAPEPTQRCI RQMKLSINGI TDGNHAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21550.1	1e-119	B3 family protein