PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024991678.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GATA
Protein Properties Length: 346aa    MW: 38197.8 Da    PI: 5.7495
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024991678.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.71.4e-17262295134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C  tkTp+WR gp g+k+LCnaCG++y++ +
  XP_024991678.1 262 CMHCEITKTPQWRAGPMGPKSLCNACGVRYKSGR 295
                     99*****************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    
MTSQNYMEEI DCGSFFDHID DLIEFPPVTD TSLNSVDCNE FTDIWINNSD DLQVTDPIFC  60
GSNSGPASSL SAELAVPYED IVQLEWLSNF VEDSFSGGGM TINKENVSVQ KETETVVAHR  120
QFQTSSPVSV LESSSSSSSS SWSGGSGGMM VPLSPIQRGP QRARSKRPRP ATFNPRAMIE  180
LLSPLVMMPV SVSPEPERNF ASRCGPKSVG CEPDQKKKKK PSKLKIQLGP AEENENQNQN  240
QNQNQNQNQN QNQNQPGGVR KCMHCEITKT PQWRAGPMGP KSLCNACGVR YKSGRLFPEY  300
RPAASPTFVP SLHSNSHKKV VEMRSKDEKM GEAEVIPNIK GGEYYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166170KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.23e-40GATA family protein