PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024991676.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 384aa MW: 43288.6 Da PI: 5.2631

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024991676.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.5	9.3e-52	19	146	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtdeelv++yL++k+ gk++++ ++++e+d+yk+ePw+L + +k+++ ewyfFs+ d+ky +g+r nrat +gyWkatgkd++v XP_024991676.1 19 LAPGFRFHPTDEELVMYYLRRKACGKPFRF-QAVSEIDVYKSEPWELAdfSPLKTRDLEWYFFSPVDRKYGNGSRLNRATGKGYWKATGKDRSVR 112 579***********************99.88**********84336777888*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + k+e++g+kktLvf++grap+g++t+Wvmheyrl XP_024991676.1 113 H-KSETIGMKKTLVFHSGRAPDGKRTNWVMHEYRL 146 .999***************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MAHELMAVTP PPPPPPTSLA PGFRFHPTDE ELVMYYLRRK ACGKPFRFQA VSEIDVYKSE 60 PWELADFSPL KTRDLEWYFF SPVDRKYGNG SRLNRATGKG YWKATGKDRS VRHKSETIGM 120 KKTLVFHSGR APDGKRTNWV MHEYRLLDQE LVRAGVAQDS FVLCRIFQKS GLGPPNGDRY 180 APFLEEEWTD DAALLVPGGE ADDDLANGDE TRAEGNDIVQ ETSAKKILDQ SEDPQTIPFV 240 CKRERSEDRA LNCEPELETF SLFHNKRSKP SDPNSGNANG SEDSTTTSQD SRRALLEFPL 300 LESIEARESQ PPARLPSFDA ATLEKSVPPG YLKFISNLEN EILNVSMEKE TLKIEVMRAQ 360 AMINILQSRI ELLSKENNGF RTGG

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MAHELMAVTP PPPPPPTSLA PGFRFHPTDE ELVMYYLRRK ACGKPFRFQA VSEIDVYKSE  60
PWELADFSPL KTRDLEWYFF SPVDRKYGNG SRLNRATGKG YWKATGKDRS VRHKSETIGM  120
KKTLVFHSGR APDGKRTNWV MHEYRLLDQE LVRAGVAQDS FVLCRIFQKS GLGPPNGDRY  180
APFLEEEWTD DAALLVPGGE ADDDLANGDE TRAEGNDIVQ ETSAKKILDQ SEDPQTIPFV  240
CKRERSEDRA LNCEPELETF SLFHNKRSKP SDPNSGNANG SEDSTTTSQD SRRALLEFPL  300
LESIEARESQ PPARLPSFDA ATLEKSVPPG YLKFISNLEN EILNVSMEKE TLKIEVMRAQ  360
AMINILQSRI ELLSKENNGF RTGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10490.2	1e-106	NAC family protein