PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024990766.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

GATA

Protein Properties

Length: 274aa MW: 30619.2 Da PI: 7.3168

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024990766.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	56.2	4.7e-18	195	229	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + kTp+WR gp g+ktLCnaCG++y++ +l XP_024990766.1 195 CQHCLAEKTPQWRAGPMGPKTLCNACGVRYKSGRL 229 *******************************9885 PP

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence
MALDPTSCLM IDDDILNFSL DGEDDDLDEE HNTTKPLSSS LNFSKPNSQD PDDWSRSFPE 60 FAEEDLEWLS NKDAFPAVET CFDLLSNPTV IVVDHQSPVS VLENSSSSSN MSNSNSTITN 120 CCGSLQIPIS YPVRKRSKRR RRRRRGFPEL PNQQCWWWNQ VNLKKQEPPP PPSRFSPPSP 180 PTAVTASATG IGRRCQHCLA EKTPQWRAGP MGPKTLCNAC GVRYKSGRLV PEYRPASSPT 240 YSSVLHSNSH RKIMEMRREK QDDGGKTACG YGVG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	143	KRSKRRRRR
2	136	145	RSKRRRRRRR
3	138	143	KRRRRR
4	138	144	KRRRRRR
5	139	145	KRRRRRR
6	139	144	RRRRRR
7	139	145	RRRRRRR
8	140	145	RRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24050.1	3e-40	GATA family protein