PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024988476.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GATA
Protein Properties Length: 336aa    MW: 37111.3 Da    PI: 5.4406
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024988476.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.7e-18253286134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C++ kTp+WR gp g+ktLCnaCG+++++ +
  XP_024988476.1 253 CNHCQVEKTPQWRTGPLGPKTLCNACGVRFKSGR 286
                     *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MECIEARALK SSFLSEIGMK STQQALFEDL FCVAGIDNVV NVSSSVEFSV DDLLDLSDKD  60
FNNSGIEYSE EDEERDFSQD TGNNLMISSN FPSAGDLVSL PAGEIHLPVD DMESLEWLSQ  120
VVDDSTSDLS LLFPAATLTE NYTGKFAVKT RHEPVVRPVI PSFTVLGLSY PVPRKYRTKR  180
SKKTGRGWSS LTESSIGTSS SYDSTVTSSH FPDPVQLIES FFSFQKPATK KHKKNSGSGS  240
SSDSSGSVTQ RCCNHCQVEK TPQWRTGPLG PKTLCNACGV RFKSGRLFPE YRPACSPTFS  300
DDIHSNSHRK VLEMRKKKET EVVEPEFSSG FHTFSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.28e-52GATA family protein