PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024987002.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GATA
Protein Properties Length: 281aa    MW: 30821.8 Da    PI: 8.7344
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024987002.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.71.4e-17212246135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+C +  Tp+WR gp+g+ktLCnaCG++y++ +l
  XP_024987002.1 212 CSHCLSQRTPQWRAGPEGPKTLCNACGVRYKSGRL 246
                     *******************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    
MDFCRNVSVS GGIPANYPPE QQLLSPSCSK LGSLDDLFSG HSMEEGDINT EWLSIFVEDC  60
LSSSGSCIPV AMPLNPMSTT SDAQGTTTTA AAAAAAAEEE KDSEMKKKKK KPHLGNNLSL  120
HKLVVPCKAR SKRRKRSQFK GTTPLSWCQD YPMNTDPPLL HQAYWLADSE LILPNKSTTP  180
NSSRSGDYGQ GVYKQIKHEE EEGSSSGQGR RCSHCLSQRT PQWRAGPEGP KTLCNACGVR  240
YKSGRLLPEY RPAKSPTFVS YKHSNSHKKV LEMRMCSSSS S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.13e-35GATA family protein