PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024986841.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | GATA | ||||||||
Protein Properties | Length: 223aa MW: 24349.5 Da PI: 9.0304 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.2 | 2e-17 | 146 | 180 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + Tp+WR gp+g+ktLCnaCG++y++ +l XP_024986841.1 146 CTHCLSQRTPQWRAGPQGPKTLCNACGVRYKSGRL 180 *******************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence |
MDFCQNISAA GGLPTTYQPP EQHLLCSLDD LLSGHSMEDV NMEWLSIFVE DCLSSSGNCM 60 PPAEVKPQST TFNAQGTNTS AEPPMKETHS MLKLVVPSKA RSKRKRSQTC WSQQYLVGKK 120 CTTPNSTNSG QEEGSSGQGQ GQGRKCTHCL SQRTPQWRAG PQGPKTLCNA CGVRYKSGRL 180 LPEYRPAKSP TFVSHKHSNS HKKVLEMRMT ILPSSLANSS SSS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 100 | 108 | ARSKRKRSQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 5e-38 | GATA family protein |