PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986450.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

GATA

Protein Properties

Length: 544aa MW: 59956.2 Da PI: 6.6199

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986450.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.8	4.6e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ XP_024986450.1 7 CYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGT 41 **************55555*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 544 aa Download sequence
MGKQGPCYHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG TLVNYTPLHA RSEPDEFEDR 60 RVSRVKAISI KNREAKLLKR KENYENVVGG SGGGMLSGGG GFASGHHNQS LHKGLDEDTS 120 NRSSSGSAIS NSDSCMQLGS ADISDLTGPS QSSVVWDTMV PSRKRTCVNR PKQSSVEKLT 180 RDLYTILHEQ QSYFSGSSEE DLIFESDTPM VSVEIGHGSV LIRHPNSAAR EEESEASSLS 240 VNNKNEAYSW LTTLPVYDAK QSGKISSWGI DSSKMPMDQC NRDHDEKLPI PANHNSPLCH 300 INLKDIINFK EFACHMTNDE QQQLLKYLPP IDTIQLPDSL KSMFESPQFM ENLFSFQKLL 360 AEGNFDLSVS ATESEGCRKL KKLALCNVTK CKWVEEYNLL QDAKCKKNSR GSVVAGVLNT 420 IAPGCSVNVQ RSQDMQFHSF PGLKNTMKSP KGAFMKASYE HKELVDNDGT GFSPRSLFAL 480 PPDNSSLMLD YLRYADESSE QDLLLDVPSN TSFPQAELLP TSSFVAQAST GSTSSSTYPS 540 FVRP

Sequence ? help Back to Top

Protein Sequence Length: 544 aa Download sequence

MGKQGPCYHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG TLVNYTPLHA RSEPDEFEDR  60
RVSRVKAISI KNREAKLLKR KENYENVVGG SGGGMLSGGG GFASGHHNQS LHKGLDEDTS  120
NRSSSGSAIS NSDSCMQLGS ADISDLTGPS QSSVVWDTMV PSRKRTCVNR PKQSSVEKLT  180
RDLYTILHEQ QSYFSGSSEE DLIFESDTPM VSVEIGHGSV LIRHPNSAAR EEESEASSLS  240
VNNKNEAYSW LTTLPVYDAK QSGKISSWGI DSSKMPMDQC NRDHDEKLPI PANHNSPLCH  300
INLKDIINFK EFACHMTNDE QQQLLKYLPP IDTIQLPDSL KSMFESPQFM ENLFSFQKLL  360
AEGNFDLSVS ATESEGCRKL KKLALCNVTK CKWVEEYNLL QDAKCKKNSR GSVVAGVLNT  420
IAPGCSVNVQ RSQDMQFHSF PGLKNTMKSP KGAFMKASYE HKELVDNDGT GFSPRSLFAL  480
PPDNSSLMLD YLRYADESSE QDLLLDVPSN TSFPQAELLP TSSFVAQAST GSTSSSTYPS  540
FVRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-127	GATA family protein