PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024986194.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | GRF | ||||||||
Protein Properties | Length: 346aa MW: 38495.6 Da PI: 8.4438 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 73.4 | 2.5e-23 | 82 | 126 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs++++ +k+CErH+hrgr+rsrk++e+ XP_024986194.1 82 DPEPGRCRRTDGKKWRCSKDAYHESKYCERHMHRGRNRSRKPVES 126 79****************************************986 PP | |||||||
2 | QLQ | 64.6 | 2.5e-22 | 21 | 56 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa Q+q+L++Q+l+yKyL+a++PvP++L+++i++ XP_024986194.1 21 PFTAVQWQELEHQALIYKYLVAGVPVPSDLVMPIRR 56 9*********************************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence |
MSGSKSVAVS GGGGGDGYRA PFTAVQWQEL EHQALIYKYL VAGVPVPSDL VMPIRRSFEA 60 LSARLFHHPT LGYCSYYGKK FDPEPGRCRR TDGKKWRCSK DAYHESKYCE RHMHRGRNRS 120 RKPVESQSTS QSLSTAMSNI GTVNSTGSVK RSFQNVSNAS SPSQSLYPIT NSESFDFGSN 180 ASETQVDTSS YVINNKDLRY AQGLTVNLDD HNYTSGVPEN ARGLGMDINI DGSRRLMPSQ 240 LSTNSLLKPQ NDSYLQSNSL QLNMTNTFDP LVDTTSMSKQ RQQHPFFGSE IGSPGGQVKH 300 EQSMRQFFDE WPKAKEPWSN LDATTQLSMS MDPEFNARNP CPPNDA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-47 | GRF family protein |