PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024984260.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GATA
Protein Properties Length: 350aa    MW: 39433.9 Da    PI: 6.6539
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024984260.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.15e-18244278135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  XP_024984260.1 244 CLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRL 278
                     99*****************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    
METPPQFFTL DKRHSDVKTE HFIIDDLLNF PTDEILPDDH DDHKIHLLPY NNNNNTTTDS  60
SNLTTGAAAV DSCNSSVCGA TDLNFTGEVA RRTFTDTQFS HDLGVPYDDM AELEWLSNFV  120
EESFSSEDME KLQLISGVKP RPDDPSETHQ FQHETDNRTT NPIFNTDMTV PGKARTKRSR  180
AAPCNWTSRL LVLSPTSTGP TATMSSESES DIVSTSTGKK TVKAPPKKKE VFENASHNGE  240
GRKCLHCATD KTPQWRTGPL GPKTLCNACG VRYKSGRLVP EYRPAASPTF VLTKHSNSHR  300
KVLELRRQKE MQRAHPQPFF HHQNMMFDVP KGPDDYLIHQ HIGPDYRQLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-89GATA family protein