PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024979098.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | SRS | ||||||||
Protein Properties | Length: 190aa MW: 21359.5 Da PI: 6.2679 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 146.5 | 2.2e-45 | 1 | 142 | 6 | 155 |
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkel 100 ++Cq+CGn+ak+dC + RCR CCk rgf+C+thvkstW pa+ ++++ ++ ++ + +++++++++++ ++ + s++s + XP_024979098.1 1 MRCQECGNKAKRDCLYYRCRSCCKGRGFECETHVKSTWAPASSTKHQVSADYST---HISHHHQEEEEQHGQQ-LHLPSSSSDMC-------VCA 84 58*****************************************99954333332...2222222222222222.12222222232.......233 PP DUF702 101 etsslPeevsseavfrcvrvssvddge...eelaYqtavsigGhvfkGiLydqGleek 155 ++P+++ e+ f cvrv+s ++++ +++aY+t+++igGhvfkGiLydqG++++ XP_024979098.1 85 CEGQFPTKMVGESTFTCVRVTSTSEENaivDQYAYETSINIGGHVFKGILYDQGPSHQ 142 3456*******************997634479***********************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence |
MRCQECGNKA KRDCLYYRCR SCCKGRGFEC ETHVKSTWAP ASSTKHQVSA DYSTHISHHH 60 QEEEEQHGQQ LHLPSSSSDM CVCACEGQFP TKMVGESTFT CVRVTSTSEE NAIVDQYAYE 120 TSINIGGHVF KGILYDQGPS HQMMNFQDRN ADGGDQQNST INIQSDSQPL DKPRPSSPPD 180 FSFDIYPHIK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 2e-34 | SRS family protein |