PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978879.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CPP

Protein Properties

Length: 757aa MW: 81958.8 Da PI: 6.6745

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978879.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.2	5e-16	463	501	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk XP_024978879.1 463 ACKRCNCKKSKCLKLYCECFAAGVYCVEPCSCQECFNKP 501 589**********************************96 PP
2	TCR	51.5	2e-16	546	585	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN+ XP_024978879.1 546 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNTF 585 589***********************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 757 aa Download sequence
MGEEKDQEKE RGVVMDTPER TQIANPLSKF EDSPVFNYIN SLSPIKPVKS VHFTQTFSSL 60 SFASLPSVFT SPHVSSLKDS RFLRRHQFSD PSKPELTSEE AKKAEISGGI LNAAQNPLRQ 120 QRDFDTANSV SETCVLQSHG CSNLESRKLS YEAVSPDTMN RLKLDDPSAS AVPFINNGPA 180 NCPLRIGTEI EGIDPLHHSK EVSGCDWDSL ISDASELLNF DSPSDTVPYK GPGQNTLDPT 240 TFPTSLTIAK PEASDGNPSE KHEDMKNAAE NYATLATTSI NNFEAGETAE DADNEVGSNL 300 YRGMRRRCLV FEMMGSRRKH LEEVSSGSSL NVSESNETVL PNDNRLLPMR TSNDSSRCIL 360 PGIGLHLNAL ASTLVDHKVV KHESSGSGRQ LTIGPPPAYR SMDSGQEPLT DVPSSEDIGT 420 AQHGASVAED ASKALGFVVN EELSQTSPRK KRRRVEHAGE TEACKRCNCK KSKCLKLYCE 480 CFAAGVYCVE PCSCQECFNK PIHEDTVLAT RKQIESRNPL AFAPKVIKTS DSMQEDESSN 540 TPASARHKRG CNCKKSGCLK KYCECYQGGV GCSINCRCEG CKNTFGRKDG GSAFIGSEMD 600 LEVNVVDDCE GNVTDGSLQK MAMHNEAEPV SATPATPSRF GRQSIQLPIP SKGKPPRSFL 660 AIGSSSSQRF GKLNPFKGGG KPDKQLQTVG EDVIPEILEE NGGSPISGVK SCSPNSKRVS 720 PPHSGMGMGL SPAPGQRSSR KLILQSIPSF PCLTPKH

Sequence ? help Back to Top

Protein Sequence Length: 757 aa Download sequence

MGEEKDQEKE RGVVMDTPER TQIANPLSKF EDSPVFNYIN SLSPIKPVKS VHFTQTFSSL  60
SFASLPSVFT SPHVSSLKDS RFLRRHQFSD PSKPELTSEE AKKAEISGGI LNAAQNPLRQ  120
QRDFDTANSV SETCVLQSHG CSNLESRKLS YEAVSPDTMN RLKLDDPSAS AVPFINNGPA  180
NCPLRIGTEI EGIDPLHHSK EVSGCDWDSL ISDASELLNF DSPSDTVPYK GPGQNTLDPT  240
TFPTSLTIAK PEASDGNPSE KHEDMKNAAE NYATLATTSI NNFEAGETAE DADNEVGSNL  300
YRGMRRRCLV FEMMGSRRKH LEEVSSGSSL NVSESNETVL PNDNRLLPMR TSNDSSRCIL  360
PGIGLHLNAL ASTLVDHKVV KHESSGSGRQ LTIGPPPAYR SMDSGQEPLT DVPSSEDIGT  420
AQHGASVAED ASKALGFVVN EELSQTSPRK KRRRVEHAGE TEACKRCNCK KSKCLKLYCE  480
CFAAGVYCVE PCSCQECFNK PIHEDTVLAT RKQIESRNPL AFAPKVIKTS DSMQEDESSN  540
TPASARHKRG CNCKKSGCLK KYCECYQGGV GCSINCRCEG CKNTFGRKDG GSAFIGSEMD  600
LEVNVVDDCE GNVTDGSLQK MAMHNEAEPV SATPATPSRF GRQSIQLPIP SKGKPPRSFL  660
AIGSSSSQRF GKLNPFKGGG KPDKQLQTVG EDVIPEILEE NGGSPISGVK SCSPNSKRVS  720
PPHSGMGMGL SPAPGQRSSR KLILQSIPSF PCLTPKH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	451	455	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	1e-147	CPP family protein