PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024978564.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ZF-HD
Protein Properties Length: 296aa    MW: 33752.7 Da    PI: 7.4832
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024978564.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1032e-3297153360
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                      vrY+eClkNhAas+G+h+vDGCgEfm++ geegt+++lkCaAC+CHR+FHRreve e
  XP_024978564.1  97 VVRYRECLKNHAASMGSHVVDGCGEFMAN-GEEGTPEGLKCAACECHRSFHRREVEGE 153
                     689*************************8.999*********************9875 PP
2Homeobox14.27.8e-05233293157
                     TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     +r Rt+ft+eq e + ++ e    k ++ +++e+++  +++gL+ ++ kvW +N ++ +kk
  XP_024978564.1 233 KRFRTKFTEEQKEKMRDFAErigwKIQKQDEQEIQQFCNEVGLKRQVFKVWMHNSKQAMKK 293
                     789************987778777799999***************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MEVRERETIS HNNPPQSNQE SSSMFSYGTL NSSRNETPDQ LRLHLHQRNN IHGLELQEQQ  60
MEAHRRRTES NPDPDPVSQT LPPPQPSATE SAAVAVVVRY RECLKNHAAS MGSHVVDGCG  120
EFMANGEEGT PEGLKCAACE CHRSFHRREV EGESQSTTTT RIHNSPPRVA AMQPIPASLP  180
YQQHHRYHHQ MPPFMVAFGG GNSVAPTESS SEDLDAFQTH AGGHMMMEQP SKKRFRTKFT  240
EEQKEKMRDF AERIGWKIQK QDEQEIQQFC NEVGLKRQVF KVWMHNSKQA MKKKQV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.19e-61ZF-HD family protein