PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024978533.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family SRS
Protein Properties Length: 333aa    MW: 35683 Da    PI: 7.3542
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024978533.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702219.47.6e-681212723154
          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 
                      g++sCqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrerqq  +a+++++++++ + ++kr+r+++ + + ++ + +    +s+
  XP_024978533.1 121 GGGVSCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQYISATQQDQSRRRPHPTTKRTRSSQDHDNPNMVHPNAIAYNSS 215
                     5789*******************************************************999999999********99999*******999**** PP

          DUF702  98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                     + le+ ++P+ev ++a frcvrvss+d+ e+++aYq+av+igGh+fkGiLydqG+e 
  XP_024978533.1 216 SGLEVGNFPSEVTTPANFRCVRVSSIDETEDQFAYQAAVNIGGHMFKGILYDQGPEG 272
                     ******************************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MAGFFSLGSA TYHSQQDPNT NLPSNPTSNS NPTESSSWFL YSTTRNTHDR PTTTATTTTK  60
DFELWQQPHA DGVHNLLTGG AVAMGGGGGD GRLINFSDES TWGSAAFVMM GHGVSGGGSG  120
GGGVSCQDCG NQAKKDCPHM RCRTCCKSRG FQCQTHVKST WVPAAKRRER QQYISATQQD  180
QSRRRPHPTT KRTRSSQDHD NPNMVHPNAI AYNSSSGLEV GNFPSEVTTP ANFRCVRVSS  240
IDETEDQFAY QAAVNIGGHM FKGILYDQGP EGQYMGGDTS SGGSAGIPQL NLTTASPGNS  300
TAAATFIGHS LYPSLGGNDY MTSTQFFHQI SRD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.12e-59SRS family protein