PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978229.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ZF-HD

Protein Properties

Length: 344aa MW: 37453.7 Da PI: 8.6185

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978229.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	110.3	1.1e-34	68	124	4	59
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 ++Y+eClkNhAa++GghavDGCgEfmps++++ +++++lkCaACgCHRnFHRr+++e XP_024978229.1 68 ITYRECLKNHAAAMGGHAVDGCGEFMPSSTSTpTDPTSLKCAACGCHRNFHRRDPDE 124 79************************99999******************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MEIPPSSPPP TTTTTTTNTT TAIKTLDPDT RIQPNTIPKH LPPPFSNGVL KRHKPRHLHH 60 INPMPVVITY RECLKNHAAA MGGHAVDGCG EFMPSSTSTP TDPTSLKCAA CGCHRNFHRR 120 DPDETFPNNP PTQHVIEYQP HHRHHPPPPP PQPISLAGAR GNSSSPPDSP SPPPISSSYY 180 PSAPHMLLAL SAGLSAPPPE NMNNPSIPIT PGSAPGIGSH PNGKKRFRTK FTQDQKDKMQ 240 ELAERVGWKM QKRDEDLIIG FCNEIGVEKG VFKVWMHNNK MNLGSKKDSG NQNDNGSYGG 300 AGAGAGGIDF LSNRDNNDNH HHHHHHQQQP HNDSISSGGD SVHR

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MEIPPSSPPP TTTTTTTNTT TAIKTLDPDT RIQPNTIPKH LPPPFSNGVL KRHKPRHLHH  60
INPMPVVITY RECLKNHAAA MGGHAVDGCG EFMPSSTSTP TDPTSLKCAA CGCHRNFHRR  120
DPDETFPNNP PTQHVIEYQP HHRHHPPPPP PQPISLAGAR GNSSSPPDSP SPPPISSSYY  180
PSAPHMLLAL SAGLSAPPPE NMNNPSIPIT PGSAPGIGSH PNGKKRFRTK FTQDQKDKMQ  240
ELAERVGWKM QKRDEDLIIG FCNEIGVEKG VFKVWMHNNK MNLGSKKDSG NQNDNGSYGG  300
AGAGAGGIDF LSNRDNNDNH HHHHHHQQQP HNDSISSGGD SVHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39760.1	1e-28	ZF-HD family protein